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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015792471.1_cds_XP_016512445.1_2431
CDS Infomation

[gene=LOC107829501] [db_xref=GeneID:107829501] [protein=polygalacturonase-1 non-catalytic subunit beta-like] [protein_id=XP_016512445.1] [location=complement(join(30092..31431,38385..38877,38997..39041))] [gbkey=CDS]
Sequence

ATGCACACTAACACTCTGCTTTTCTGCATTTTCCTCCTTTTCAGGGTAATTGTTGCCGGA
AATTCTGGCGATTCAATAAACCCTTTTACACCAAAAGCATATTTGATTCGTTACTGGAAG
AAACAGATTTCAAATGAATTACCAAAACCTTGGTTTCTTCTCAATAAAGCGTCACCATTA
AATGCTGCACAATTTGCAACTTACTCAAAACTAGCAGGGGATCAAGAATCTCTGTCAAAG
GAGATTTCCTCCTTTTGCTCCTCTGCTAATCTTCTCTGTTTCCCTGACATATCATCAAGT
CTAGAGAAACATGGCCAAGATGTGCAATTTTCTTCCTACATGAGCAAGAATTTCACCAAC
TATGGATCTAAACTGCCACGTGGTTTTGACAGCTTCAAGAAATATGCCGAGAATGACAAC
CTTCCCGTGAATTCGTTCCGTCAATACAGCAGAGGTGGTGCTGGCCATGATGATAAGTTT
TCCACTTACGCACCAAATGGAAACGTGGTTGATCAAAGCTTCAACACTTATGGGACAGGC
CTTTCTGCTGGTGGGGTTGGCGAGTTCAAGAACTACGCCCCCAATGTCAACGTCCCTAAT
CTACGGTTCACCACCTATTCTACTGAGGTAGCGGGCAGAAAGCAATCTTTTTCAAGCTAT
ACAAAAGATACAAATTCTGGGGACCAATCTTTCACAAGCTACGGTAGAAATAGTAACGGA
GCAATTAACGATTTCACCAGCTATGCTAATAACTCCAATGTCATAGGCTCAACATTTACG
AACTATGGCGAATCAGGAAATGGCGGGGGCAACACGTTCAAATCCTACGGGTCTAATGCA
AATGTACCAGAAAATACTTTCACGAATTATGGTGCTGATGGTAATGCTCCTTTCGAGACT
TTTATTAATTATCGCGACAAGTCTAATGTTGGAGATGATAAATTCACATCGTACGTCGAT
GATCCAAATGCTGGCAGAGCTAATTTCGAGAATTATGGTCAGTCATTTGGTGAAGGGTCT
GATACATTCAATAAATATGGATCTGGTATTACTGATGCTCAAACAGTTGGATTCAAGACT
TATGGTGTGAATACGACTTTTAAAGAGTATGGAAAAACAGGTGTCACATTTGCTGACTAT
AAGAACAAGACCATTAATCAGGTTTCAGTTTCATCTTCCTTGGTGTCTGATAAAAATGCG
AAAAACAAATGGATTGAGCCAGGGAAATTTTTCAGAGAAAAAATGTTGAAAACAGAAACT
ATAATGCCAATGCCTGATATTCAAGATAAAATGCCAAAAAGATCATTTTTGCCTAGAGTG
ATAGCTTCAAAATTACCGTTTTCTACCTCAAAAATTAGTGACCTAAAGACAATTTTCCAC
GCCGGAGACGATACTCAGATGGGGAAAATGATGCTCGATGCATTAACGGAGTGTGAAAGA
TCGCCGAGCGCTGGCGAGACCAAACGTTGCGTCGCCTCCGTTGAGGACATGATTGACTTT
TCAACCTCAGTGTTAGGTCGAAACGTTGTCGTTCGAACAACTGAGAATACAAAGGGGTCA
AAGGGAAATATTATGATAGGATCAGTCAAAGGAATCAACGGTGGGAAAGTAACCAAATCA
GTTTCTTGTCATCAGAGTTTGTTCCCGTACTTAGTTTACTATTGCCATTCGGTTCCTAAA
GTTCGGGTATACGAAGCGGATATTTTGGATCCGAATTCAAAGGCTAAGATTAATCATGGC
GTTGCCATCTGTCATGTGGACACGTCATCTTGGGGAGCCAGTCATGGAGCTTTTATTGCA
CTCGGGTCAGGACCCGGAAAGATTGAAGTTTGTCATTGGATCTTTGAGAATGATATGACT
TGGGCAGTTGCTGACTGA

Peptide Sequence

PEP ID

XP_016512445.1
PEP Infomation

PREDICTED: polygalacturonase-1 non-catalytic subunit beta-like [Nicotiana tabacum]
Sequence

MHTNTLLFCIFLLFRVIVAGNSGDSINPFTPKAYLIRYWKKQISNELPKPWFLLNKASPL
NAAQFATYSKLAGDQESLSKEISSFCSSANLLCFPDISSSLEKHGQDVQFSSYMSKNFTN
YGSKLPRGFDSFKKYAENDNLPVNSFRQYSRGGAGHDDKFSTYAPNGNVVDQSFNTYGTG
LSAGGVGEFKNYAPNVNVPNLRFTTYSTEVAGRKQSFSSYTKDTNSGDQSFTSYGRNSNG
AINDFTSYANNSNVIGSTFTNYGESGNGGGNTFKSYGSNANVPENTFTNYGADGNAPFET
FINYRDKSNVGDDKFTSYVDDPNAGRANFENYGQSFGEGSDTFNKYGSGITDAQTVGFKT
YGVNTTFKEYGKTGVTFADYKNKTINQVSVSSSLVSDKNAKNKWIEPGKFFREKMLKTET
IMPMPDIQDKMPKRSFLPRVIASKLPFSTSKISDLKTIFHAGDDTQMGKMMLDALTECER
SPSAGETKRCVASVEDMIDFSTSVLGRNVVVRTTENTKGSKGNIMIGSVKGINGGKVTKS
VSCHQSLFPYLVYYCHSVPKVRVYEADILDPNSKAKINHGVAICHVDTSSWGASHGAFIA
LGSGPGKIEVCHWIFENDMTWAVAD

Transcript Sequence

Gene sequence data has not been registered.